[ { "locus": "SORBI_3009G030300", "gene_names": "", "gene_symbols": "SbRPAP3", "references": { "37631136": { "description": "SbRPAP3 is a subunit of the R2TP complex in Sorghum bicolor, bears a structural resemblance to yeast and human counterparts, and interacts with essential molecular chaperones, indicating functional conservation in plants.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G172300", "gene_names": "", "gene_symbols": "", "references": { "37717251": { "description": "Sorghum F-box protein triggers an oxidative burst as part of its defense mechanism against Colletotrichum sublineola", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G137101", "gene_names": "Brachytic1", "gene_symbols": "SbBr1", "references": { "37737036": { "description": "Sorghum brachytic1 (SbBr1) alternatively spliced alleles may confer semi-dwarfism in a similar manner to the maize ortholog", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G341700", "gene_names": "Glume Coverage 1", "gene_symbols": "GC1", "references": { "35217660": { "description": "Naturally truncated variations of GC1 (Glume Coverage 1) result in low glume coverage.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G040200", "gene_names": "", "gene_symbols": "SbMPK14", "references": { "35176445": { "description": "SbMPK14 functions as a negative regulator of the drought response in sorghum by suppressing the activity of specific ERF and WRKY transcription factors", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G085400", "gene_names": "", "gene_symbols": "ARG1", "references": { "35018449": { "description": "The CARG-ARG1 locus is associated with Colletotrichum sublineola (Cs) resistance", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G085350", "gene_names": "", "gene_symbols": "CARG", "references": { "35018449": { "description": "The CARG-ARG1 locus is associated with Colletotrichum sublineola (Cs) resistance", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G167000", "gene_names": "phosphoenolpyruvate carboxylase 3", "gene_symbols": "SbPPC3", "references": { "35488514": { "description": "Sorghum phosphoenolpyruvate carboxylase SbPPC3 involved in stress response and central metabolism.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G104500", "gene_names": "", "gene_symbols": "SbGRF1", "references": { "32831017": { "description": "Sorghum Growth Regulating Factors (GRFs) SbGRF1, 2, 4, and 7 are involved in defense response to aphid stress.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G297800", "gene_names": "", "gene_symbols": "SbGRF2", "references": { "32831017": { "description": "Sorghum Growth Regulating Factors (GRFs) SbGRF1, 2, 4, and 7 are involved in defense response to aphid stress.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G269900", "gene_names": "", "gene_symbols": "SbGRF4", "references": { "32831017": { "description": "Sorghum Growth Regulating Factors (GRFs) SbGRF1, 2, 4, and 7 are involved in defense response to aphid stress.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G203400", "gene_names": "", "gene_symbols": "SbGRF7", "references": { "32831017": { "description": "Sorghum Growth Regulating Factors (GRFs) SbGRF1, 2, 4, and 7 are involved in defense response to aphid stress.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G418500", "gene_names": "", "gene_symbols": "SbWRKY22", "references": { "37373435": { "description": "Transcription factors SbWRKY22 and SbWRKY65 enhance Aluminum tolerance in sweet sorghum.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G285500", "gene_names": "", "gene_symbols": "SbWRKY65", "references": { "37373435": { "description": "Transcription factors SbWRKY22 and SbWRKY65 enhance Aluminum tolerance in sweet sorghum.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "AT1G26520", "gene_names": "Zn-regulated GTPase metalloprotein activator", "gene_symbols": "ZNG1", "references": { "37965006": { "description": "ZNG1, Zn-regulated GTPase metalloprotein activator, Zn transferase for AtMAP1A", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "AT1G80480", "gene_names": "", "gene_symbols": "ZNG2A1", "references": { "37965006": { "description": "Zn transferase", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G213600", "gene_names": "low germination stimulant", "gene_symbols": "LGS1", "references": { "28396420": { "description": "LGS1 (low germination stimulant) provides striga tolerance", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G292600", "gene_names": "phytoene synthase", "gene_symbols": "PSY", "references": { "18162592": { "description": "Catalyzes the conversion of two molecules of geranyl geranyl diphosphate to form 15-cis-phytoene, in the first committed step of the carotenoid biosynthesis pathway", "literatureType": "PubMed" }, "37138226": { "description": "Regulates flux towards the carotenoid biosythetic pathway. Converts geranyl geranyl dishosphate into 15-cis- phytoene", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G018000", "gene_names": "", "gene_symbols": "CRTISO", "references": { "37138226": { "description": "Carotenoid isomerase expressed on the grain, differentially expressed through grain development.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G308200", "gene_names": "", "gene_symbols": "CYP97C1", "references": { "37138226": { "description": "Carotenoid epsilon hydroxylase expressed on the grain, differentially expressed through grain development.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G072400", "gene_names": "zeta carotene desaturase", "gene_symbols": "ZDS", "references": { "36977987": { "description": "catalyzes the desaturation/reduction of zeta-carotene into lycopene", "literatureType": "PubMed" }, "37138226": { "description": "Zeta-carotene desaturase expressed in sorghum grain", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G383400", "gene_names": "", "gene_symbols": "PDS", "references": { "37138226": { "description": "15-cis-phytoene desaturase expressed in the grain and DE through development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G197400", "gene_names": "lycopene epsilon cyclase", "gene_symbols": "lcyE", "references": { "37138226": { "description": "A lycopene epsilon-cyclase expressed in the grain and DE during development.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G277400", "gene_names": "", "gene_symbols": "VDE", "references": { "37138226": { "description": "Violaxanthin de-epoxidase expressed in sorghum grain and DE through grain development.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G074000", "gene_names": "lycopene beta cyclase", "gene_symbols": "lcyB, lycb", "references": { "37138226": { "description": "Lycopene beta-cyclase expressed in sorghum grain, DE through development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G346000", "gene_names": "CYP97A3 carotene hydroxylase", "gene_symbols": "CYP97A3", "references": { "33016639": { "description": "catalyzes the hydroxylation of the ε- and β-ionone rings of α-carotene, yielding lutein, and the sequential β-ring hydroxylation of β-carotene to to β-cryptoxanthin and finally zeaxanthin", "literatureType": "PubMed" }, "37138226": { "description": "Beta-ring hydroxylase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G097500", "gene_names": "Zeaxanthin epoxidase", "gene_symbols": "ZEP", "references": { "33016639": { "description": "ZEP catalyzes the epoxidation of zeaxanthin to antheraxanthin and subsequently to violaxanthin in the carotenoid biosynthetic pathway", "literatureType": "PubMed" }, "37138226": { "description": "Zeaxanthin epoxidase expressed in sorghum grain, DE through development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G160500", "gene_names": "", "gene_symbols": "CRTISO", "references": { "37138226": { "description": "Carotenoid isomerase expressed in sorghum grains, DE through grain development.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G049200", "gene_names": "", "gene_symbols": "", "references": { "37138226": { "description": "Violaxanthin de-epoxidase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G177400", "gene_names": "phytoene desaturase", "gene_symbols": "PDS", "references": { "36977987": { "description": "catalyzes the desaturation of 15-cis-phytoene into 9,15,9'-tri-cis-z-carotene in the second committed step of carotenoid biosynthesis", "literatureType": "PubMed" }, "37138226": { "description": "15-cis-phytoene desaturase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G188200", "gene_names": "beta carotene hydroxylase", "gene_symbols": "β-OH, (B-OH)", "references": { "33016639": { "description": "catalyzes the β-ring hydroxylation of β-carotene to produce β-cryptoxanthin, an immediate precursor to zeaxanthin", "literatureType": "PubMed" }, "37138226": { "description": "Beta-carotene 3-hydroxylase expressed in sorghum grain, DE through grain development.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G103300", "gene_names": "1-deoxy-D-xylulose 5-phosphate reductoisomerase", "gene_symbols": "DXR", "references": { "33016639": { "description": "catalyes the reduction of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce 2-C-methyl-D-erythritol-4-phosphate (MEP). This is the second commited tspe in the MEP pathway", "literatureType": "PubMed" }, "37138226": { "description": "Converts deoxyxylulose 5-phosphate to methylerythritol 4-phosphate in the second step in the 2-C-methyl-D-erythritol 4-phosphate MEP pathway that produces geranyl geranyl disphosphate (GGPP)", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G232600", "gene_names": "phytoene desaturase", "gene_symbols": "β-OH, PDS", "references": { "36977987": { "description": "catalyzes the desaturation of 15-cis-phytoene into 9,15,9'-tri-cis-z-carotene in the second committed step of carotenoid biosynthesis", "literatureType": "PubMed" }, "37138226": { "description": "15-cis-phytoene desaturase expressed in sorghum grain,", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G130400", "gene_names": "lycopene beta cyclase", "gene_symbols": "lcyB, lycb", "references": { "37138226": { "description": "Lycopene beta-cyclase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3008G096800", "gene_names": "", "gene_symbols": "Z-ISO", "references": { "37138226": { "description": "Zeta-carotene isomerase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3008G180800", "gene_names": "phytoene synthase", "gene_symbols": "PSY", "references": { "18162592": { "description": "Catalyzes the conversion of two molecules of geranyl geranyl diphosphate to form phytoene, in the first committed step of the carotenoid biosynthesis pathway", "literatureType": "PubMed" }, "37138226": { "description": "Phytoene synthase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G042000", "gene_names": "", "gene_symbols": "ABA2", "references": { "37138226": { "description": "Xanthoxin dehydrogenase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G062300", "gene_names": "abscisic aldehyde oxidase", "gene_symbols": "AAO", "references": { "37138226": { "description": "Indole-3-acetaldehyde oxidase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G062500", "gene_names": "alcohol aldehyde oxidase", "gene_symbols": "AAO", "references": { "33016639": { "description": "catalyzes the conversion of violaxanthin to abscisic acid in carotenoid degradation", "literatureType": "PubMed" }, "37138226": { "description": "Indole-3-acetaldehyde oxidase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G062600", "gene_names": "", "gene_symbols": "AAO", "references": { "37138226": { "description": "Indole-3-acetaldehyde oxidase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G064500", "gene_names": "deoxyxylulose 5-phosphate synthase, 1-deoxy-D-xylulose-5-phosphate synthase", "gene_symbols": "DXS", "references": { "33016639": { "description": "It catalyzes the condensation of pyruvate and glyceraldehyde 3-phosphate to produce 1-deoxy-D-xylulose 5-phosphate (DXP), as a first (rate limiting) step in the methylerythritol phosphate (MEP) pathway", "literatureType": "PubMed" }, "37138226": { "description": "It catalyzes the condensation of pyruvate and glyceraldehyde 3-phosphate to produce 1-deoxy-D-xylulose 5-phosphate (DXP), as a first (rate limiting) step in the methylerythritol phosphate (MEP) pathway", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G155300", "gene_names": "", "gene_symbols": "NCED", "references": { "37138226": { "description": "9-cis-epoxycarotenoid dioxygenase expressed in sorghum grain, DE through developmen", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G509200", "gene_names": "", "gene_symbols": "CCD", "references": { "37138226": { "description": "Carotenoid cleavage oxygenase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G037400", "gene_names": "", "gene_symbols": "NCED", "references": { "37138226": { "description": "9-cis-epoxycarotenoid dioxygenase expressed in sorghum grain, DE through development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G043500", "gene_names": "", "gene_symbols": "AAO3", "references": { "37138226": { "description": "Abscisic-aldehyde oxidase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G225400", "gene_names": "alcohol aldehyde oxidase", "gene_symbols": "AAO", "references": { "37138226": { "description": "(+)-abscisic acid 8'-hydroxylase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G293600", "gene_names": "", "gene_symbols": "CCD8", "references": { "37138226": { "description": "Carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase expressed in sorghum grains, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G268500", "gene_names": "", "gene_symbols": "NCED/CCD4", "references": { "37138226": { "description": "9-cis-epoxycarotenoid dioxygenase expressed in sorghum grain", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G268700", "gene_names": "", "gene_symbols": "AAO", "references": { "37138226": { "description": "(+)-abscisic acid 8'-hydroxylase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G002500", "gene_names": "carotenoid cleavage dioxygenase", "gene_symbols": "CCD8, CCD", "references": { "33016639": { "description": "catalyzes the cleavage of β-carotene to carlactone in 5-deoxystrigol biosynthesis", "literatureType": "PubMed" }, "37138226": { "description": "carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase expressed in sorghum grain, DE through grain development", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G170300", "gene_names": "carotenoid cleavage dioxygenase", "gene_symbols": "CCD7, CCD", "references": { "33016639": { "description": "catalyzes the cleavage of β-carotene to carlactone in 5-deoxystrigol biosynthesis", "literatureType": "PubMed" }, "37138226": { "description": "9-cis-beta-carotene 9',10'-cleaving dioxygenase expressed in sorghum grain", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G281900", "gene_names": "2-C-methyl-d-erythritol 2,4-cyclodiphosphate synthase", "gene_symbols": "ispF/MDS", "references": { "33016639": { "description": "catalyzes the conversion of 4-CDP-2-C-methyl-D-erythritol-2-phosphate (CDP-M2P) to 2-C-methyl-D-erythritol 2,4-cyclopyrophosphate (ME-2,4cPP) in the methylerythritol phosphate MEP pathway", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G353300", "gene_names": "geranyl geranyl diphosphate synthase", "gene_symbols": "GGPPS", "references": { "33016639": { "description": "catalyzes the condensation of farnesyl diphosphate (FPP) to produce geranyl geranyl diphosphate (GGPP) in the methylerythritol phosphate MEP pathway", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G111500", "gene_names": "geranyl geranyl diphosphate synthase", "gene_symbols": "GGPPS", "references": { "33016639": { "description": "catalyzes the condensation of farnesyl diphosphate (FPP) to produce geranyl geranyl diphosphate (GGPP) in the methylerythritol phosphate MEP pathway", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G287300", "gene_names": "geranyl geranyl diphosphate synthase", "gene_symbols": "GGPPS", "references": { "33016639": { "description": "catalyzes the condensation of farnesyl diphosphate (FPP) to produce geranyl geranyl diphosphate (GGPP) in the methylerythritol phosphate MEP pathway", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G170300", "gene_names": "carotenoid cleavage dioxygenase", "gene_symbols": "CCD", "references": { "33016639": { "description": "catalyzes the cleavage of β-carotene to carlactone in 5-deoxystrigol biosynthesis", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G050300", "gene_names": "9-cis-epoxycarotenoid dioxygnenase", "gene_symbols": "NCED", "references": { "33016639": { "description": "catalyzes the degradation of 9-cis-neoxanthin and 9-cis-violaxanthin for ABA synthesis", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G168700", "gene_names": "9-cis-epoxycarotenoid dioxygnenase", "gene_symbols": "NCED", "references": { "33016639": { "description": "catalyzes the degradation of 9-cis-neoxanthin and 9-cis-violaxanthin for ABA synthesis", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G280800", "gene_names": "Tannin1", "gene_symbols": "Tan1", "references": { "36163368": { "description": "Regulate biosynthesis of condensed tannins in testa.", "literatureType": "PubMed" }, "38495646": { "description": "Tannin presence is regulated by two major loci (B1 and B2) that have a duplicate reces- sive interaction.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G453200", "gene_names": "", "gene_symbols": "SbCER6", "references": { "27354556": { "description": "This gene plays a crucial role in the biosynthesis pathway of cuticular wax. Mutations in this gene result in a bloomless (cuticular wax is largely reduced) phenotype.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3009G083300", "gene_names": "", "gene_symbols": "SbCER5", "references": { "27354556": { "description": "This gene plays a crucial role in the biosynthesis pathway of cuticular wax. Mutations in this gene result in a phenotype that lacks epicuticular wax.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G135700", "gene_names": "mutliseeded1", "gene_symbols": "MSD1", "references": { "29483511": { "description": "A TCP transcription factors that play diverse roles in the formation of plant architecture and development by regulating Jasmonic acid pathway", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G085100", "gene_names": "BRITTLE-1", "gene_symbols": "BT1", "references": { "36110358": { "description": "Mediates transport of ADP-glucose into into amyloplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G226800", "gene_names": "", "gene_symbols": "SbFNR1", "references": { "26994288": { "description": "P gene responsible for changes in sorghum leaf color upon wounding. Has FNR activity in vitro to convert flavanones (naringenin or eriodictyol) to flavan-4-ols (apiforol or luteoforol) and may be involved in the 3-deoxyanthocyanidin synthesis pathway.", "literatureType": "PubMed" }, "37762209": { "description": "FNR activity towards flavanones, such as eriodictyol and naringenin reducing them to the corresponding flavan-4-ols, apiforol and luteoforol", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G022600", "gene_names": "granule-bound starch synthase I", "gene_symbols": "GBSS1, SbWx", "references": { "18545276": { "description": "GBSSI is responsible for the synthesis of amylose, a linear component of starch.", "literatureType": "PubMed" }, "38602082": { "description": "glucose-6-phosphate isomerase highly expressed in seed compartment endosperms expressed in the endosperm", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3008G142400", "gene_names": "", "gene_symbols": "", "references": { "33723068": { "description": "The gene encodes a mixed hopane triterpenoid synthase with primarily simiarenol product specificity. It is likely involved in the synthesis of triterpenoid that form part of the cuticular wax on sorghum leaves.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G228100", "gene_names": "Blomless 40", "gene_symbols": "Bm40", "references": { "29379518": { "description": "The gene encodes a GDSL-like lipase/acylhydrolase. It is involved in cuticular wax pathway in sorghum.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G030600", "gene_names": "", "gene_symbols": "", "references": { "25284785": { "description": "This gene is responsible for coding the fifth subunit of RNA polymerase IV and V.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G050200", "gene_names": "", "gene_symbols": "SbDFR3", "references": { "20529887": { "description": "Pathogen-inducible expression. Participate in 3-deoxyanthocyanidin\nbiosynthesis through the conversion of flavanones to flavan-4-ols.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G230900", "gene_names": "", "gene_symbols": "SbDFR1", "references": { "20529887": { "description": "Responsive to conditions which stimulated anthocyanin accumulation by accepting dihydroflavonol as substrate. Substantially lower but detectable NADPH-dependent activities toward flavanones.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G058800", "gene_names": "", "gene_symbols": "SbOMT4", "references": { "37308495": { "description": "Pathogen-inducible O-methyltransferase. Part of a gene cluster for specialized metabolism in the sorghum genome.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G200900", "gene_names": "", "gene_symbols": "F3′H", "references": { "27917182": { "description": "Associated with the dark color variation in injured leaves.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G095600", "gene_names": "multiseeded2", "gene_symbols": "msd2", "references": { "31597271": { "description": "encodes a 13-lipoxygenase that catalyzes the conversion of free α-linolenic acid (18:3) to 13(S)-hydroperoxylinolenic acid (13-Hpot)", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3008G166400", "gene_names": "anthracnose resistance gene", "gene_symbols": "ARG4", "references": { "38111157": { "description": "ARG4 gene confers anthracnose resistance in SAP135 and hereafter designated ANTHRACNOSE RESISTANCE GENE 4 (ARG4) gene.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G048600", "gene_names": "GLUTAREDOXIN 4", "gene_symbols": "GRX4", "references": { "38289828": { "description": "SORBI_3003G048600 (GLUTAREDOXIN 4, GRX4) found significantly upregulated under chilling stress conditions.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G257600", "gene_names": "", "gene_symbols": "TAF11", "references": { "38289828": { "description": "TAF11", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G537300", "gene_names": "", "gene_symbols": "REV", "references": { "38289828": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G186300", "gene_names": "", "gene_symbols": "AKR2", "references": { "38289828": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G368100", "gene_names": "Suberin biosynthetic gene A", "gene_symbols": "SbASFTa", "references": { "38537644": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G122800", "gene_names": "Suberin biosynthetic gene B", "gene_symbols": "SbASFTb", "references": { "38537644": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G010300", "gene_names": "", "gene_symbols": "SbGPAT4/8", "references": { "38537644": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3009G162000", "gene_names": "", "gene_symbols": "SbGPAT5/7", "references": { "38537644": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G413700", "gene_names": "", "gene_symbols": "SbABCG1/SbABCG2/ABCG6/ABCG20a", "references": { "38537644": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G076600", "gene_names": "Tannin2", "gene_symbols": "Tan2", "references": { "38495646": { "description": "Tannin presence is regulated by two major loci (B1 and B2) that have a duplicate reces- sive interaction.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "AT3G55240", "gene_names": "BRZ-INSENSITIVE-PALE GREEN 4", "gene_symbols": "BPG4", "references": { "38191552": { "description": "BPG4 Interacts with GOLDEN2- LIKE (GLK) transcription factors and suppresses GLK1 activities, thereby causing a decrease in the amounts of chlorophylls and the size of light-harvesting complexes. BPG4 expression is induced by BR deficiency and light, and is regulated by the circadian rhythm.", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G221000", "gene_names": "male sterile 9", "gene_symbols": "ms9", "references": { "33016577": { "description": "Male-Sterile 9", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G147400", "gene_names": "", "gene_symbols": "DRY", "references": { "30309900": { "description": "control crop stem texture", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G064600", "gene_names": "", "gene_symbols": "SbNAC9", "references": { "36768724": { "description": "Improves Drought Tolerance by Enhancing Scavenging Ability of Reactive Oxygen Species and Activating Stress-Responsive Genes of Sorghum", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G001500", "gene_names": "", "gene_symbols": "SbDof21", "references": { "36293009": { "description": "Regulating Starch Biosynthesis in Sorghum", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G270900", "gene_names": "", "gene_symbols": "SbOCL3", "references": { "25081518": { "description": "regulates kernel nutrition and abscission", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G398200", "gene_names": "", "gene_symbols": "Sbvp1", "references": { "11430426": { "description": "potential involvement in pre-harvest sprouting resistance", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G052900", "gene_names": "", "gene_symbols": "Sbra2", "references": { "16399802": { "description": "determine the fate of stem cells in branch meristems", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G421300", "gene_names": "", "gene_symbols": "awn", "references": { "34271177": { "description": "responsible for awn loss during sorghum domestication or improvement", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G057866", "gene_names": "", "gene_symbols": "Ma1/SbPRR37", "references": { "37789045": { "description": "Ma1", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G302700", "gene_names": "", "gene_symbols": "Ma2/SbEHD1", "references": { "37789045": { "description": "Ma2", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G394400", "gene_names": "", "gene_symbols": "Ma3/SbPhyB", "references": { "37789045": { "description": "Ma3", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G087100", "gene_names": "", "gene_symbols": "Ma5/SbPhyC", "references": { "37789045": { "description": "Ma5", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G004400", "gene_names": "", "gene_symbols": "Ma6/SbGHD7", "references": { "37789045": { "description": "Ma6", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3009G229800", "gene_names": "", "gene_symbols": "Dw1", "references": { "37789045": { "description": "Dw1", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G067700", "gene_names": "", "gene_symbols": "Dw2", "references": { "37789045": { "description": "Dw2", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G163800", "gene_names": "", "gene_symbols": "Dw3", "references": { "37789045": { "description": "Dw3", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G115800", "gene_names": "", "gene_symbols": "Ma4/SbCO", "references": { "doi.org/10.1111/grs.12343": { "description": "Ma4", "literatureType": "DOI" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G488600", "gene_names": "SbPRE4", "gene_symbols": "Sobic.001G488600", "references": { "PMID: 39000365; DOI: 10.3390/ijms25137257": { "description": "An atypical bHLH transcription factor that can be induced by abiotic stress and aphid treatments. Through phytohormone and transgenic analyses, the paper demonstrated that SbPRE4 improves sorghum resistance to aphids by accumulating jasmonic acids (JAs) in transgenic Arabidopsis, indicating its molecular and biological function in pest resistance.", "literatureType": "DOI" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G320900", "gene_names": "Phospholipase 1", "gene_symbols": "SbpPLA-1", "references": { "38922509": { "description": "Phospholipase 1", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G228700", "gene_names": "Phospholipase IIa", "gene_symbols": "SbpPLA-IIa", "references": { "38922509": { "description": "Phospholipase IIa", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G158600", "gene_names": "", "gene_symbols": "Sobic.007G158600", "references": { "38922509": { "description": "Phospholipase IIb in Chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G158700", "gene_names": "", "gene_symbols": "SbpPLA-IIc", "references": { "38922509": { "description": "Phospholipase IIc - chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G158800", "gene_names": "", "gene_symbols": "SbpPLA-IId", "references": { "38922509": { "description": "SbpPLA-IId - phospholipase IId cellular location is chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G186100", "gene_names": "", "gene_symbols": "SbpPLA-IIe", "references": { "38922509": { "description": "SbpPLA-IIe - Phospholipase, cellular location is chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G186200", "gene_names": "SbpPLA-IIf", "gene_symbols": "SbpPLA-IIf", "references": { "38922509": { "description": "Sobic.005G186200 Phospholipase in Chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G186400", "gene_names": "", "gene_symbols": "SbpPLA-IIg", "references": { "38922509": { "description": "SbpPLA-IIg phospholipase in cytoplasm", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G389400", "gene_names": "", "gene_symbols": "SbpPLA-IIh", "references": { "38922509": { "description": "SbpPLA-IIh - phospholipase in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G348600", "gene_names": "", "gene_symbols": "SbpPLA-IIQ", "references": { "38922509": { "description": "SbpPLA-IIQ patatin-related Phospholipase in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G377600", "gene_names": "", "gene_symbols": "SbpPLA-IIk", "references": { "38922509": { "description": "SbpPLA-IIk patatin-related Phospholipase in cytoplasm", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G158500", "gene_names": "", "gene_symbols": "SbpPLA-IIm", "references": { "38922509": { "description": "SbpPLA-IIm patatin-related Phospholipase in chloroplast (similar to Putative latex protein allergen)", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G433900", "gene_names": "", "gene_symbols": "SbpPLA-IIIa", "references": { "38922509": { "description": "SbpPLA-IIIa patatin-related phospholipase in nucleus", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G067500", "gene_names": "", "gene_symbols": "SbpPLA-IIIb", "references": { "38922509": { "description": "SbpPLA-IIIb patatin-related phospholipase in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G031800", "gene_names": "", "gene_symbols": "SbpPLA-IIIc", "references": { "38922509": { "description": "SbpPLA-IIIc patatin-related Phospholipase in cytoplasm", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G228100", "gene_names": "", "gene_symbols": "SbpPLA-IIId", "references": { "38922509": { "description": "SbpPLA-IIId patatin-related phospholipase in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G157700", "gene_names": "", "gene_symbols": "SbpPLA-IIIe", "references": { "38922509": { "description": "SbpPLA-IIIe patatin-related phospholipase in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3008G166050", "gene_names": "", "gene_symbols": "SbpPLA-IIIf", "references": { "38922509": { "description": "SbpPLA-IIIf patatin-related phospholipase in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G157900", "gene_names": "", "gene_symbols": "SbpPLA-IIIg", "references": { "38922509": { "description": "SbpPLA-IIIg patatin-related phospholipase in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G304200", "gene_names": "", "gene_symbols": "SbSDP1", "references": { "38922509": { "description": "SbSDP1 triacylglycerol lipase SDP1 in nucleus", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G041900", "gene_names": "", "gene_symbols": "SbSDP1-L", "references": { "38922509": { "description": "SbSDP1-L triacylglycerol lipase SDP1 in plastid", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3007G036900", "gene_names": "", "gene_symbols": "SbPLA1-Ia", "references": { "38922509": { "description": "SbPLA1-Ia phospholipase A1-lbeta2 in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G047800", "gene_names": "", "gene_symbols": "SbPLA1-Ib", "references": { "38922509": { "description": "SbPLA1-Ib phospholipase A1 in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G432600", "gene_names": "", "gene_symbols": "SbPLA1-Ic1", "references": { "38922509": { "description": "SbPLA1-Ic1 phospholipase A1 in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G177200", "gene_names": "", "gene_symbols": "SbPLA1-IIa", "references": { "38922509": { "description": "SbPLA1-IIa phospholipase A1 in nucleus", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G239500", "gene_names": "", "gene_symbols": "SbPLA1-IIb", "references": { "38922509": { "description": "SbPLA1-IIb phospholipase A1 in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G239200", "gene_names": "", "gene_symbols": "SbPLA1-IIc", "references": { "38922509": { "description": "SbPLA1-IIc phospholipase A1 in cytoplasm", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G274700", "gene_names": "", "gene_symbols": "SbPLA1-IId", "references": { "38922509": { "description": "SbPLA1-IId phospholipase A1-IIdelta in chloroplast", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G120400", "gene_names": "", "gene_symbols": "SbsPLA2a", "references": { "38922509": { "description": "SbsPLA2a phospholipase A2 in golgi apparatus", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G145100", "gene_names": "", "gene_symbols": "SbsPLA2b", "references": { "38922509": { "description": "SbsPLA2b phospholipase A2 in ER", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G357800", "gene_names": "", "gene_symbols": "SbsPLA2c", "references": { "38922509": { "description": "SbsPLA2c phospholipase A2 in ER", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G429900", "gene_names": "", "gene_symbols": "SbsPLA2d", "references": { "38922509": { "description": "SbsPLA2d phospholipase extra", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G163700", "gene_names": "", "gene_symbols": "SbSBEII", "references": { "38602082": { "description": "encodes starch synthase 2 expressed in the endosperm. similar to 1,4-alpha-glucan-branching enzyme 2, chloroplast precursor", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G093400", "gene_names": "", "gene_symbols": "SbSSIIa", "references": { "38602082": { "description": "encodes starch branching enzyme expressed in the endosperm", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G160400", "gene_names": "", "gene_symbols": "SbSH2.1", "references": { "38602082": { "description": "encodes glucose-1-phosphate adenylyltransferase, preferentially expressed in seed and endosperm", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G230500", "gene_names": "", "gene_symbols": "SbSH2.1", "references": { "38602082": { "description": "encodes glucose-1-phosphate adenylyltransferase, preferentially expressed in seed and endosperm, chloroplast precursor", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G047700", "gene_names": "", "gene_symbols": "SbSSI", "references": { "38602082": { "description": "starch synthase", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G238600", "gene_names": "", "gene_symbols": "SSIIb", "references": { "38602082": { "description": "starch synthases 2", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G066800", "gene_names": "", "gene_symbols": "SbSbeIIa", "references": { "38602082": { "description": "starch branching gene", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3006G221000", "gene_names": "", "gene_symbols": "SbSSIII", "references": { "38602082": { "description": "starch synthases 3", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3010G144400", "gene_names": "", "gene_symbols": "", "references": { "38602082": { "description": "glycosyltransferase", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3004G212300", "gene_names": "", "gene_symbols": "SbHCT1", "references": { "38602082": { "description": "starch biosynthesis gene", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G201900", "gene_names": "", "gene_symbols": "SbSTP7", "references": { "38602082": { "description": "starch biosynthesis gene (similar to Glucose transporter)", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G035200", "gene_names": "", "gene_symbols": "SbINT3", "references": { "38602082": { "description": "starch biosynthesis gene", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G083900", "gene_names": "", "gene_symbols": "SbPHO1", "references": { "38602082": { "description": "seed starch synthesis gene (similar to Alpha 1,4-glucan phosphorylase L isozyme)", "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G148400", "gene_names": "", "gene_symbols": "SbATX1", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G016500", "gene_names": "", "gene_symbols": "SbATX2", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3003G241700", "gene_names": "", "gene_symbols": "SbATX3", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G107300", "gene_names": "", "gene_symbols": "SbWDR5A", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3002G347000", "gene_names": "", "gene_symbols": "SbWDR5B", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3001G462600", "gene_names": "", "gene_symbols": "SbRbBP5", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G032400", "gene_names": "", "gene_symbols": "SbASH2A", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3005G032500", "gene_names": "", "gene_symbols": "SbASH2B", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] }, { "locus": "SORBI_3008G011400", "gene_names": "", "gene_symbols": "SbASH2C", "references": { "38744082": { "description": null, "literatureType": "PubMed" } }, "po": [], "to": [] } ]